Package: OpenSpecy 1.2.0

OpenSpecy: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra

Raman and (FT)IR spectral analysis tool for plastic particles and other environmental samples (Cowger et al. 2021, <doi:10.1021/acs.analchem.1c00123>). With read_any(), Open Specy provides a single function for reading individual, batch, or map spectral data files like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies processing spectra, including smoothing, baseline correction, range restriction and flattening, intensity conversions, wavenumber alignment, and min-max normalization. Spectra can be identified in batch using an onboard reference library (Cowger et al. 2020, <doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available via run_app() or online at <https://openanalysis.org/openspecy/>.

Authors:Win Cowger [cre, aut, dtc], Zacharias Steinmetz [aut], Nick Leong [aut], Andrea Faltynkova [aut, dtc], Hannah Sherrod [aut], Andrew B Gray [ctb], Hannah Hapich [ctb], Jennifer Lynch [ctb, dtc], Hannah De Frond [ctb, dtc], Keenan Munno [ctb, dtc], Chelsea Rochman [ctb, dtc], Sebastian Primpke [ctb, dtc], Orestis Herodotou [ctb], Mary C Norris [ctb], Christine M Knauss [ctb], Aleksandra Karapetrova [ctb, dtc, rev], Vesna Teofilovic [ctb], Laura A. T. Markley [ctb], Shreyas Patankar [ctb, dtc], Rachel Kozloski [ctb, dtc], Samiksha Singh [ctb], Katherine Lasdin [ctb], Cristiane Vidal [ctb], Clare Murphy-Hagan [ctb], Philipp Baumann [ctb], Pierre Roudier [ctb], National Renewable Energy Laboratory [fnd], Possibility Lab [fnd]

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OpenSpecy.pdf |OpenSpecy.html✨
OpenSpecy/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/wincowgerdev/openspecy-package/issues

On CRAN:

62 exports 23 stars 3.01 score 107 dependencies 14 scripts 474 downloads

Last updated 4 days agofrom:ca0d14050f. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:adj_intensadj_negadj_resadj_waveai_classifyas_hyperSpecas_OpenSpecyc_speccalc_window_pointscheck_libcheck_OpenSpecycollapse_specconform_resconform_speccor_specdef_featuresfill_specfilter_specflatten_rangegen_gridget_libget_metadataheatmap_spechuman_tsident_specinteractive_plotis_empty_vectoris_OpenSpecyload_libmake_relmanage_namatch_specmax_cor_namedmean_replacemerge_mapOpenSpecyos_similarityplotly_specprocess_specread_anyread_aspread_enviread_extdataread_jdxread_manyread_opusread_opus_rawread_sparead_spcread_specread_textread_ziprestrict_rangerm_librun_appsample_specsig_noisesmooth_intensspec_ressplit_specsubtr_baselinewrite_spec

Dependencies:askpassbase64encbitopsbriobslibcachemcallrcaToolsclicodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledeldirdescdiffobjdigestdplyrevaluatefansifarverfastmapfontawesomeforeachfsgenericsggplot2glmnetgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrhyperSpecinterpisobanditeratorsjpegjquerylibjsonliteknitrlabelinglaterlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemmandmunsellnlmeopensslpillarpkgbuildpkgconfigpkgloadplotlypngpraiseprocessxpromisespspurrrR6rappdirsRColorBrewerRcppRcppEigenrematch2rlangrmarkdownrprojrootsassscalesshapeshinysignalsourcetoolsstringistringrsurvivalsystestthattibbletidyrtidyselecttinytexutf8vctrsviridisLitewaldowithrxfunxml2xtableyaml